| MirGeneDB ID | Obi-Novel-48 |
|---|
| Family name |
COL-NOVEL-48 (all species) |
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| Seed |
GCAAAGG |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Esc-Novel-48
Ovu-Novel-48
|
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| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
KQ417087: 367474-367531 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUCAUAAAACGAAUAGGCUUUUCUGCACCCAGCAAAGGGCUUGACGCUAGCGCUUAUCCCCGACAGCUAGUGACAAAGCCUUUGUGGGCAGCGGUGAGCCAUAACACGAGUAUAUAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUCAUAAAACGAAUAGG---| UU A- G G GA- GCUUAU
CUU CUGC CCCA CAAAGG CUU CGCUAGC C
GAG GGCG GGGU GUUUCC GAA GUGAUCG C
AGAUAUAUGAGCACAAUACC^ U- AC - - ACA ACAGCC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Obi-Novel-48_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGCAAAGGGCUUGACGCUAGCG -22
Get sequence
|
|---|
| Star sequence |
Obi-Novel-48_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUAGUGACAAAGCCUUUGUGGG -58
Get sequence
|
|---|
