| MirGeneDB ID | Obi-Novel-40 |
|---|
| Family name |
COL-NOVEL-40 (all species) |
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| Seed |
UAAACCC |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Esc-Novel-40
Ovu-Novel-40
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
KQ423958: 172996-173056 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGCCGGUUCUUAAAACUGUCGUGAUUAACGAGGAUAUAAAACGGGAUCUAUGCCUGCAAAUAUUUGUGCCUAAACCCGUUUGUUAUCCUUGCUAAUCAUGUAACUUUCUUCAGCACCACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGCCGGUUCUUAAAACUGU--| A UA AUC U CUGCAA
CGUGAUUA CGAGGAUA AAACGGG UA GC A
GUACUAAU GUUCCUAU UUUGCCC AU CG U
CACACCACGACUUCUUUCAAU^ C UG AA- C UGUUUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Obi-Novel-40_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGAUAUAAAACGGGAUCUAUGC -23
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-40_3p |
| mirBase accession | None |
|---|
| Sequence |
39- CUAAACCCGUUUGUUAUCCUUG -61
Get sequence
|
|---|
