| MirGeneDB ID | Obi-Novel-4 |
|---|
| Family name |
CEP-NOVEL-4 (all species) |
|---|
| Seed |
CGGUCAU |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Novel-4
Npo-Novel-4
Ovu-Novel-4
|
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| Node of Origin (locus) |
Cephalopoda
|
|---|
| Node of Origin (family) |
Cephalopoda
|
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Genome context
(PRJNA270931_OBI) |
KQ417152: 826222-826279 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCUGUCCAGAAAAGACAAAAUUGAUUGCAGUAAGGCAGAUAUAGGGCCCGUGUAGCUGAAAUUCCGUCGGUCAUAUGUCUGCCUGAUUUCAGUCAAUUUAAUAUUCACCAUCGCAUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCUGUCCAGAAAAGACA--| C A G CG UAGCU
AAAUUGAUUG AGU AGGCAGAUAUA GGCC UG G
UUUAACUGAC UUA UCCGUCUGUAU CUGG GC A
CAUACGCUACCACUUAUAA^ U G A CU CUUAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Obi-Novel-4_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UAAGGCAGAUAUAGGGCCCGUG -22
Get sequence
|
|---|
| Mature sequence |
Obi-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCGGUCAUAUGUCUGCCUGAUU -58
Get sequence
|
|---|
