MirGeneDB 2.1

MirGeneDB ID

Obi-Novel-3-v2

Family name CEP-NOVEL-3 (all species)
Seed GUCGGCU
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues Obi-Novel-3-v1  Obi-Novel-3-v3 
Orthologues Esc-Novel-3-v2  Npo-Novel-3  Ovu-Novel-3-v2 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Cephalopoda
Genome context
(PRJNA270931_OBI)
KQ418486: 141081-141141 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUGCCUGUGAAGUAAGGGUAGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUGGGUUCCACCCCAGAUUCUACUAUAUAUGU
Get precursor sequence
Structure
        10          20          30        40         50          
CCCUGCCUGUGAAGUAA--    --|  U   G       CC   C-       A   GGAAUU 
                   GGGU  AGC CCA CCAAACA  CCG  CGGCUGA AAG      \
                   CCCA  UUG GGU GGUUUGU  GGC  GUCGGCU UUC      C
UGUAUAUAUCAUCUUAGAC    CC^  -   -       U-   CA       G   CACUCU 
 .       110       100          90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Obi-Novel-3-v2_5p*

mirBase accessionNone
Sequence
0- CAAACACCCCGCCGGCUGAAAAG -23
Get sequence
Mature sequence

Obi-Novel-3-v2_3p

mirBase accessionNone
Sequence
38- UGUCGGCUGACCGGUUGUUUGGU -61
Get sequence