MirGeneDB ID | Obi-Novel-3-v2 |
Family name |
CEP-NOVEL-3 (all species) |
Seed |
GUCGGCU |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Novel-3-v1
Obi-Novel-3-v3
|
Orthologues |
Esc-Novel-3-v2
Npo-Novel-3
Ovu-Novel-3-v2
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (PRJNA270931_OBI) |
KQ418486: 141081-141141 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCUGCCUGUGAAGUAAGGGUAGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUGGGUUCCACCCCAGAUUCUACUAUAUAUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCUGCCUGUGAAGUAA-- --| U G CC C- A GGAAUU
GGGU AGC CCA CCAAACA CCG CGGCUGA AAG \
CCCA UUG GGU GGUUUGU GGC GUCGGCU UUC C
UGUAUAUAUCAUCUUAGAC CC^ - - U- CA G CACUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Obi-Novel-3-v2_5p* |
mirBase accession | None |
Sequence |
0- CAAACACCCCGCCGGCUGAAAAG -23
Get sequence
|
Mature sequence |
Obi-Novel-3-v2_3p |
mirBase accession | None |
Sequence |
38- UGUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|