| MirGeneDB ID | Obi-Novel-18 |
|---|
| Family name |
COL-NOVEL-18 (all species) |
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| Seed |
AGAUUCG |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Esc-Novel-18
Ovu-Novel-18
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
KQ416166: 416107-416164 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUAGCAGUUAAUUAUAUUCUCCAGUGUCUGUAGAUUCGAGUCCGGGUCGGAGAUGUUAUCACAGUUCUGACAGGACAUCGAACCUGCAAACCUUGGAAGAGCAGUCAACAGGGAAAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUAGCAGUUAAUUAUAU- - U C A -| GG AUGUU
UC UCCAG GU UGUAG UUCGA GUCC GUCGGAG A
AG AGGUU CA ACGUC AAGCU CAGG CAGUCUU U
GUAAAGGGACAACUGACG A C A C A^ A- GACAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms |
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| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Obi-Novel-18_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAGAUUCGAGUCCGGGUCGGAG -22
Get sequence
|
|---|
| Star sequence |
Obi-Novel-18_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- CUGACAGGACAUCGAACCUGCA -58
Get sequence
|
|---|
