MirGeneDB ID | Obi-Mir-216-P2j |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-216-P2k
|
Orthologues |
Aae-Mir-216-P2
Asu-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Cgi-Mir-216-P2
Dan-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Efe-Mir-216-P2
Hme-Mir-216-P2
Isc-Mir-216-P2
Lgi-Mir-216-P2
Npo-Mir-216-P2j
Ovu-Mir-216-P2j
Tca-Mir-216-P2
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Bilateria
|
Genome context (PRJNA270931_OBI) |
KQ415847: 307656-307715 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAACCACUCAUUGAUUGACAGGUGCUUGUGUAAUCUCAGCUGGUAAUAUAUGAGUGGUUCAAUCUCUCACCGUUACUCGCUGUGGUUGAACUAUCACCUUGCCAAAACAUCUCAACGUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAACCACUCAUUGAUUGAC--| CUU G U U AUA GUGGUU
AGGUG GU UAAUC CAGC GGUAAU UGA \
UCCAC CA GUUGG GUCG UCAUUG ACU C
CUUGCAACUCUACAAAACCGU^ UAU A U C CC- CUCUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Obi-Mir-216-P2j_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCUGGUAAUAUAUGA -23
Get sequence
|
Star sequence |
Obi-Mir-216-P2j_3p* |
mirBase accession | None |
Sequence |
37- CACCGUUACUCGCUGUGGUUGAA -60
Get sequence
|