| MirGeneDB ID | Obi-Mir-1984-P1 |
|---|
| Family name |
MIR-1984 (all species) |
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| Seed |
GCCCUAU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
Obi-Mir-1984-P2
|
|---|
| Orthologues |
Cgi-Mir-1984
Esc-Mir-1984
Lgi-Mir-1984
Npo-Mir-1984
Ovu-Mir-1984-P1
|
|---|
| Node of Origin (locus) |
Octopus
|
|---|
| Node of Origin (family) |
Mollusca
|
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Genome context
(PRJNA270931_OBI) |
KQ422643: 240921-240979 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAGACUUAUAUUGUUUUAAGGUUGGUUAUUUGCCCUAUACCUCAGUCGCUGUGUUAAUGUAACCUCAGCGUCUGAUGUCGUAAGGCACGUUAACAACUGUCACACGUCGAAUGUCGCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGACUUAUAUUGUUUUAA-- GUU U C -| C U UGUUAA
GGUUG AU UGCC UAU AC UCAG CGCUG U
UCAAC UG ACGG AUG UG AGUC GCGAC G
ACCGCUGUAAGCUGCACACUG AAU C A C^ U U UCCAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Obi-Mir-1984-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCCUAUACCUCAGUCGCUGU -22
Get sequence
|
|---|
| Star sequence |
Obi-Mir-1984-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AGCGUCUGAUGUCGUAAGGCACG -59
Get sequence
|
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