MirGeneDB ID | Npo-Mir-216-P2j |
---|---|
Family name | MIR-216 (all species) |
Seed | AAUCUCA |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-216-P2k |
Orthologues | Aae-Mir-216-P2 Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Cgi-Mir-216-P2 Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dpu-Mir-216-P2 Dsi-Mir-216-P2 Dya-Mir-216-P2 Efe-Mir-216-P2 Hme-Mir-216-P2 Isc-Mir-216-P2 Lgi-Mir-216-P2 Obi-Mir-216-P2j Ovu-Mir-216-P2j Tca-Mir-216-P2 |
Node of Origin (locus) | Cephalopoda |
Node of Origin (family) | Bilateria |
Genome context (GCA_018389105_NPO) |
JACATO010001670.1: 36790-36848 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GCUUGGAACCCGAGACCAGAGCUGAUUGUCUAAUCUCAGCUGGUAAAUCUGAGUGGUGCCUGCUCUCAACCUUACCAGCAGAGGUUUGACAAACACUCCUACUGACCACUCAACAGUCUGet precursor sequence |
Structure | 10 20 30 40 50 GCUUGGAACCCGAGACCA---| C A U A AUC GUGGUG GAG UG UUGUC AAUCUC GCUGGUAA UGA \ CUC AC AACAG UUGGAG CGACCAUU ACU C UCUGACAACUCACCAGUCAUC^ - A U A CCA CUCGUC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Npo-Mir-216-P2j_5p (predicted) |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCUGGUAAAUCUGA -22
Get sequence
|
Star sequence | Npo-Mir-216-P2j_3p* (predicted) |
mirBase accession | None |
Sequence |
37- AACCUUACCAGCAGAGGUUUGA -59
Get sequence
|