MirGeneDB ID | Npo-Mir-2-o23 |
---|---|
Family name | MIR-2 (all species) |
Seed | CACAGCC |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-2-o20 Npo-Mir-2-o21 Npo-Mir-2-o22f Npo-Mir-2-o22g Npo-Mir-2-o24 |
Orthologues | Esc-Mir-2-o23-v1 Esc-Mir-2-o23-v2 Obi-Mir-2-o23 Ovu-Mir-2-o23-v1 Ovu-Mir-2-o23-v2 |
Node of Origin (locus) | Cephalopoda |
Node of Origin (family) | Protostomia |
Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 410351-410408 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | CUACUUGCGGGACACUGAUCUGUGUCAGAGUCGUCAAAGUGGUGGUGAUGUGUUGAAGUUGACCAUAUCACAGCCAGCUUUGAUGAGCUCCGGCAUGUGAUUGCUCGUCCUUUGCCCCGet precursor sequence |
Structure | 10 20 30 40 50 CUACUUGCGGGACACUGA - A - -| G UGUUGAA UC UGUGUC GAG UCGUCAAAG UGGU GUGAUG \ AG GUACGG CUC AGUAGUUUC ACCG CACUAU G CCCCGUUUCCUGCUCGUU U C G G^ A ACCAGUU 110 100 90 80 70 60 |
Deep sequencing | |
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis. |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Star sequence | Npo-Mir-2-o23_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UCGUCAAAGUGGUGGUGAUG -20
Get sequence
|
Mature sequence | Npo-Mir-2-o23_3p (predicted) |
mirBase accession | None |
Sequence |
37- UCACAGCCAGCUUUGAUGAGC -58
Get sequence
|