MirGeneDB ID | Npo-Mir-1990 |
---|---|
Family name | MIR-1990 (all species) |
Seed | GGGACUA |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | |
Orthologues | Cgi-Mir-1990 Cte-Mir-1990-P1 Cte-Mir-1990-P2 Efe-Mir-1990-P1 Efe-Mir-1990-P2 Efe-Mir-1990-P3 Lan-Mir-1990 Lgi-Mir-1990 |
Node of Origin (locus) | Lophotrochozoa |
Node of Origin (family) | Lophotrochozoa |
Genome context (GCA_018389105_NPO) |
JACATO010001038.1: 22720-22775 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | UUCAUUCUAAUGCAGACAGGAAGCACGCGCAGUAAGUUGAUGGGGUCCCAGGUUGCAAACAAUCCCGGGACUACGUCAACUGCUGGCGAGUGCUUCCGCCAACUACGUCGUCGUCUGet precursor sequence |
Structure | 10 20 30 40 50 UUCAUUCUAAUGCAGACA- G -| A GG A UUGCA GGAAGCAC CG CAGUA GUUGAUG GUCCC GG \ CCUUCGUG GC GUCGU CAACUGC CAGGG CC A UCUGCUGCUGCAUCAACCG A G^ - AU C UAACA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Npo-Mir-1990_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGUAAGUUGAUGGGGUCCCAGG -22
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|
Mature sequence | Npo-Mir-1990_3p (predicted) |
mirBase accession | None |
Sequence |
35- CGGGACUACGUCAACUGCUGG -56
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|