MirGeneDB ID | Mun-Novel-2 |
Family name |
AMP-NOVEL-2 (all species) |
Seed |
GAGGCUU |
Species |
Microcaecilia (Microcaecilia unicolor) |
MiRBase ID |
|
Paralogues |
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Orthologues |
Xtr-Novel-2
|
Node of Origin (locus) |
Amphibia
|
Node of Origin (family) |
Amphibia
|
Genome context (Mun_miRNA_loci) |
Novel-2_NC_044033.1:484688944-484689087: 44-101 [-]
|
Precursor (pre-Mir +30nt flank) |
CCCGCUUCCAGCUAAUCAUUGAGGCUGCAUUGAGGCUUCCCACUUCAAGGCUGUGUUCUGACUCAUCCUGGAAGCUGGAAGCCUGGAUGCAUCCCCAAAGCAGAGCAAAAAGCAGCUG
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|
Structure | 10 20 30 40 50
CCCGCUUCCAGCUAAUCA--| A C G CA A C UGUU
UUG GG UGCAUU AGGCUUCC CUUC AGG UG C
AAC CC ACGUAG UCCGAAGG GAAG UCC AC U
GUCGACGAAAAACGAGACGA^ C U G UC G U UCAG
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Mun-Novel-2_5p |
mirBase accession | None |
Sequence |
0- UGAGGCUUCCCACUUCAAGGCUG -23
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|
Star sequence |
Mun-Novel-2_3p* |
mirBase accession | None |
Sequence |
35- UCCUGGAAGCUGGAAGCCUGGAU -58
Get sequence
|