MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-506-P2

Family name MIR-506 (all species)
Seed UUGGUAC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-547
Paralogues Mmu-Mir-506-P1  Mmu-Mir-506-P7  Mmu-Mir-506-P14  Mmu-Mir-506-P15a  Mmu-Mir-506-P15b1  Mmu-Mir-506-P15b2  Mmu-Mir-506-P15c1  Mmu-Mir-506-P15c2  Mmu-Mir-506-P15d  Mmu-Mir-506-P16  Mmu-Mir-506-P17  Mmu-Mir-506-P18  Mmu-Mir-506-P19  Mmu-Mir-506-P20  Mmu-Mir-506-P21  Mmu-Mir-506-P22  Mmu-Mir-506-P23  Mmu-Mir-506-P24  Mmu-Mir-506-P25  Mmu-Mir-506-P26  Mmu-Mir-506-P27 
Orthologues Bta-Mir-506-P2f  Bta-Mir-506-P2g  Bta-Mir-506-P2h  Cfa-Mir-506-P2d  Cfa-Mir-506-P2e  Cpo-Mir-506-o2  Cpo-Mir-506-P2a  Cpo-Mir-506-P2b  Cpo-Mir-506-P2c  Dno-Mir-506-P2  Hsa-Mir-506-P2  Mml-Mir-506-P2  Ocu-Mir-506-P2  Rno-Mir-506-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(mm10)
chrX: 67988383-67988440 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-506-P2)
Mir-506-P1 chrX: 67988099-67988156 [-] UCSC Ensembl
Mir-506-P2 chrX: 67988383-67988440 [-] UCSC Ensembl
Mir-506-P7 chrX: 68010114-68010170 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCACCUUCACUCAUGUAGUGUGUGAUGUAUCACUUGAGGAUGUACCACCCAUUUAACAGGAAACAUGCUUGGUACAUCUUUGAGUGAGAUAACACACAACAGCUACCACCUCAAUACU
Get precursor sequence
Structure
        10          20        30        40        50        
GCACCUUCACUCAUGUAG--|     A   A     UG           CC  UUUAAC 
                    UGUGUG UGU UCACU  AGGAUGUACCA  CA      A
                    ACACAC AUA AGUGA  UUCUACAUGGU  GU      G
UCAUAACUCCACCAUCGACA^     A   G     GU           UC  ACAAAG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-506-P2_5p*

mirBase accessionMIMAT0017210
Sequence
0- CACUUGAGGAUGUACCACCCA -21
Get sequence
Proposed targets TargetScanVert: mmu-miR-547-5p
miRDB: MIMAT0017210
Mature sequence

Mmu-Mir-506-P2_3p

mirBase accessionMIMAT0003173
Sequence
37- CUUGGUACAUCUUUGAGUGAG -58
Get sequence
Proposed targets microrna.org: MIMAT0003173
TargetScanVert: mmu-miR-547-3p
miRDB: MIMAT0003173