MirGeneDB

MirGeneDB ID

Mmu-Mir-23-P1

Family name MIR-23 (all species)
Seed UCACAUU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-23a
Paralogues Mmu-Mir-23-P2 
Orthologues Aca-Mir-23-P1  Ami-Mir-23-P1  Bta-Mir-23-P1  Cfa-Mir-23-P1  Cpi-Mir-23-P1  Cpo-Mir-23-P1  Dno-Mir-23-P1  Dre-Mir-23-P1  Ete-Mir-23-P1  Hsa-Mir-23-P1  Mdo-Mir-23-P1  Mml-Mir-23-P1  Oan-Mir-23-P1  Rno-Mir-23-P1  Sha-Mir-23-P1  Sto-Mir-23-o1  Sto-Mir-23-P1  Xtr-Mir-23-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr8: 84208527-84208584 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-23-P1)
Mir-23-P1 chr8: 84208527-84208584 [+] UCSC Ensembl
Mir-27-P1 chr8: 84208685-84208747 [+] UCSC Ensembl
Mir-24-P1 chr8: 84208839-84208896 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGCCCCCCUCACUGUGCCUCGGACGGCUGGGGUUCCUGGGGAUGGGAUUUGAUGCCAGUCACAAAUCACAUUGCCAGGGAUUUCCAACUGACCCUGUGCUCUGCCUUGGGGGCUCC
Get precursor sequence
Structure
        10        20         30         40        50        
GCUGCCCCCCUCACUGUGCCUC-  A   C   -|        G    G     GAUGC 
                       GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                       CC GUC ACC UUAGGGACC UUAC CUAAA     A
CCUCGGGGGUUCCGUCUCGUGUC  A   A   U^        G    A     CACUG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Ce Ce Es He Ki Li Lu Ov Pa Sk Sp Te Em
Star sequence

Mmu-Mir-23-P1_5p*

MirBase accessionMIMAT0017019
Sequence
0- GGGGUUCCUGGGGAUGGGAUUU -22
Get sequence
Validated targets TargetScanVert: mmu-miR-23a-5p
miRDB: MIMAT0017019
Mature sequence

Mmu-Mir-23-P1_3p

MirBase accessionMIMAT0000532
Sequence
36- AUCACAUUGCCAGGGAUUUCCA -58
Get sequence
Validated targets microrna.org: MIMAT0000532
TargetScanVert: mmu-miR-23a-3p
miRDB: MIMAT0000532