MirGeneDB

MirGeneDB ID

Mmu-Mir-219-P1

Family name MIR-219 (all species)
Seed GAGUUGC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-219a-1
Paralogues Mmu-Mir-219-P1-as  Mmu-Mir-219-P2  Mmu-Mir-219-P2-as 
Orthologues Aae-Mir-219  Aca-Mir-219-P1  Ami-Mir-219-P1  Bfl-Mir-219  Bge-Mir-219  Bta-Mir-219-P1  Cfa-Mir-219-P1  Cgi-Mir-219  Cin-Mir-219  Cpi-Mir-219-P1  Cpo-Mir-219-P1  Cte-Mir-219  Dan-Mir-219  Dme-Mir-219  Dmo-Mir-219  Dno-Mir-219-P1  Dpu-Mir-219  Dre-Mir-219-P1a  Ete-Mir-219-P1  Hsa-Mir-219-P1  Isc-Mir-219  Lan-Mir-219  Mdo-Mir-219-P1  Mml-Mir-219-P1  Ocu-Mir-219-P1  Pfl-Mir-219  Pmi-Mir-219  Rno-Mir-219-P1  Sha-Mir-219-P1  Sko-Mir-219  Spu-Mir-219  Sto-Mir-219-P1-v1  Sto-Mir-219-P1-v2  Tca-Mir-219 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(mm10)
chr17: 34025009-34025072 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-219-P1)
Mir-219-P1 chr17: 34025009-34025072 [-] UCSC Ensembl
Mir-219-P1-as chr17: 34025012-34025073 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUCUCUCCCCGUCCCGGGCCGCGGCUCCUGAUUGUCCAAACGCAAUUCUCGAGUCUCUGGCUCCGGCCGAGAGUUGCGUCUGGACGUCCCGAGCCGCCGCCCCCAAACCUCGAGGGGGAGAG
Get precursor sequence
Structure
        10           20        30        40        50        60 
GCUUCUCUCCCCGUCCC---|   C       CU   U     A            AGUCUCU 
                    GGGC GCGGCUC  GAU GUCCA ACGCAAUUCUCG       G
                    CCCG CGCCGAG  CUG CAGGU UGCGUUGAGAGC       G
GAGAGGGGGAGCUCCAAACC^   C       CC   -     C            CGGCCUC 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Ce Ce Es He Ki Li Lu Ov Pa Sk Sp Te Em
Star sequence

Mmu-Mir-219-P1_5p*

MirBase accessionMIMAT0000664
Sequence
0- UGAUUGUCCAAACGCAAUUCUCG -23
Get sequence
Validated targets microrna.org: MIMAT0000664
TargetScanVert: mmu-miR-219a-5p
miRDB: MIMAT0000664
Mature sequence

Mmu-Mir-219-P1_3p

MirBase accessionMIMAT0017055
Sequence
41- AGAGUUGCGUCUGGACGUCCCGA -64
Get sequence
Validated targets TargetScanVert: mmu-miR-219a-1-3p
miRDB: MIMAT0017055