MirGeneDB 2.1

MirGeneDB ID

Mdo-Novel-2

Family name MAR-NOVEL-2 (all species)
Seed AUCACAG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID
Paralogues
Orthologues Sha-Novel-2 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(monDom5_add)
6: 166795585-166795641 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCAGAGAAAAUGCUGAACUGCAUUGGUAGAGGUUUCCUCAUCCGGGAAUUUCUUAUACUAAUGAAAUCACAGUUGAGGAAACUCGUACCAGUGCAGAUGGUUCUGCAGUCCCUAGU
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Structure
        10          20        30        40        50        
GGCAGAGAAAAUGCUGAA--|          GA          UCCGG  A    UUAU 
                    CUGCAUUGGUA  GGUUUCCUCA     GA UUUC    A
                    GACGUGACCAU  UCAAAGGAGU     CU AAAG    C
UGAUCCCUGACGUCUUGGUA^          GC          UGACA  -    UAAU 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Novel-2_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUUUCCUCAUCCGGGAAUUUC -23
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Mature sequence

Mdo-Novel-2_3p

mirBase accessionNone
Sequence
35- AAUCACAGUUGAGGAAACUCGU -57
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