MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-340

Family name MIR-340 (all species)
Seed AGUAAUG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-340
Paralogues
Orthologues Bta-Mir-340  Cfa-Mir-340  Cpo-Mir-340  Dno-Mir-340  Ete-Mir-340  Hsa-Mir-340  Mml-Mir-340  Mmu-Mir-340  Ocu-Mir-340  Rno-Mir-340-P1  Rno-Mir-340-P2  Sha-Mir-340-v1  Sha-Mir-340-v2 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(monDom5_add)
1: 72641020-72641074 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUGGACGGUGAUCAAGGUGUGACUAUAAAGUAAUGAGAUUGAUUUCUGUGGUAUAGUAAAUGGAAAUCAGUUUCAUUACCUUACAGUCACAUCUAAUCUUCUACAAUGUUGU
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Structure
        10         20        30        40        50       
AAAAUGGACGGUGAUCA-|         A   A                    GGUA 
                  AGGUGUGACU UAA GUAAUGAGAUUGAUUUCUGU    U
                  UCUACACUGA AUU CAUUACUUUGACUAAAGGUA    A
UGUUGUAACAUCUUCUAA^         C   C                    AAUG 
   110       100        90        80        70        60
Deep sequencing
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CommentThe Drosha cut varies between marsupials and between marsupials and eutherians.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-340_5p

mirBase accessionMIMAT0006143
Sequence
0- AAGUAAUGAGAUUGAUUUCUGU -22
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Proposed targets TargetScanVert: mdo-miR-340-5p
Star sequence

Mdo-Mir-340_3p*

mirBase accessionMIMAT0026767
Sequence
34- GGAAAUCAGUUUCAUUACCUU -55
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Proposed targets TargetScanVert: mdo-miR-340-3p