MirGeneDB

MirGeneDB ID

Mdo-Mir-205-P1

Family name MIR-205 (all species)
Seed CCUUCAU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-205a
Paralogues
Orthologues Aca-Mir-205-P1  Ami-Mir-205-P1  Bta-Mir-205-P1  Cfa-Mir-205-P1  Cli-Mir-205-P1  Cpi-Mir-205-P1  Cpo-Mir-205-P1  Dno-Mir-205-P1  Dre-Mir-205-P1  Ete-Mir-205-P1  Gga-Mir-205-P1  Hsa-Mir-205-P1  Mml-Mir-205-P1  Mmu-Mir-205-P1  Oan-Mir-205-P1  Ocu-Mir-205-P1  Rno-Mir-205-P1  Sha-Mir-205-P1  Sto-Mir-205-P1  Tgu-Mir-205-P1a  Tgu-Mir-205-P1b  Xtr-Mir-205-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(monDom5)
2: 116544499-116544557 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCUCAGGAUGAUCCAUGAAUUUCUCUUGUCCUUCAUUCCACCGGAGUCUGUCUCAUAUCUAAUCAGAUUUCAGUGGAGUGAAGCAUAAGAGGCAUGGAGUUGACUCAGCAUCAGCGG
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Structure
        10        20          30        40        50         
GAGCUCAGGAUGAUCCAUGAAUU--|       C           C        UCUCAU 
                         UCUCUUGU CUUCAUUCCAC GGAGUCUG      \
                         GGAGAAUA GAAGUGAGGUG CUUUAGAC      A
GGCGACUACGACUCAGUUGAGGUAC^       C           A        UAAUCU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-205-P1_5p

MirBase accessionMIMAT0012749
Sequence
0- UCCUUCAUUCCACCGGAGUCUG -22
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Validated targets TargetScanVert: mdo-miR-205a
Star sequence

Mdo-Mir-205-P1_3p*

MirBase accessionNone
Sequence
37- GAUUUCAGUGGAGUGAAGCAUA -59
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