MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-215
Paralogues
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
2: 130471245-130471305 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCAUCAGUAAGAAAUGGUGUGUAGGAAAAUGACCUAUGAAUUGACAGACAUUAUAUUUAAAGUUUGUCUGUCAUUUCUGUAGGCCAAUGCCUUGUAUGUCUGUGCUGCUUCAAAACCAC
Get precursor sequence
Structure
        10          20        30         40        50         
UGCCAUCAGUAAGAAAU-- GU       AAAA  A     -|  U         UUAUAU 
                   G  GUGUAGG    UG CCUAU GAA UGACAGACA      U
                   C  UAUGUUC    AC GGAUG CUU ACUGUCUGU      U
CACCAAAACUUCGUCGUGU UG       CGUA  C     U^  U         UUGAAA 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-192-P1_5p

mirBase accessionMIMAT0012751
Sequence
0- AUGACCUAUGAAUUGACAGACA -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-215
Star sequence

Mdo-Mir-192-P1_3p* (predicted)

mirBase accessionNone
Sequence
38- UCUGUCAUUUCUGUAGGCCAAUG -61
Get sequence