MirGeneDB ID | Mal-Mir-194-P2b |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-194-P2a
|
Orthologues |
Aca-Mir-194-P2
Ami-Mir-194-P2
Bta-Mir-194-P2
Cfa-Mir-194-P2
Cpi-Mir-194-P2
Cpo-Mir-194-P2
Dno-Mir-194-P2
Dre-Mir-194-P2b
Ete-Mir-194-P2
Gja-Mir-194-P2
Gmo-Mir-194-P2b
Hsa-Mir-194-P2
Lch-Mir-194-P2
Loc-Mir-194-P2
Mml-Mir-194-P2
Mmu-Mir-194-P2
Mun-Mir-194-P2
Oan-Mir-194-P2
Ocu-Mir-194-P2
Pbv-Mir-194-P2
Rno-Mir-194-P2
Sha-Mir-194-P2
Spt-Mir-194-P2
Sto-Mir-194-P2
Tni-Mir-194-P2b
Xtr-Mir-194-P2
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884735.1: 1355510-1355566 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCACUGAUGAGCCUUCUGGUGCUUGCUGGCUGUAACAGCAACUCCAUGUGGAAUCUCUGCUUGUUCCAGUGGAAGUGCUGUUACCUGCAGAGAGCUGCCAAACUCAAGUGAAGCCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCACUGAUGAGCCUUCU- -| UG G U- AC G UCUC
GGU GCU CUG C GUAACAGCA UCCAU UGGAA U
CCG CGA GAC G CAUUGUCGU AGGUG ACCUU G
CGCCGAAGUGAACUCAAA U^ GA - UC GA - GUUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Mal-Mir-194-P2b_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
Star sequence |
Mal-Mir-194-P2b_3p* |
mirBase accession | None |
Sequence |
35- CCAGUGGAAGUGCUGUUACCUG -57
Get sequence
|