MirGeneDB 2.1
MirGeneDB ID

Lpo-Mir-279-P11

Family name MIR-279 (all species)
Seed GACUAGA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-279-P9  Lpo-Mir-279-P10  Lpo-Mir-279-P12  Lpo-Mir-279-P13 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Cte-Mir-279-o11  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666253.1: 358370-358428 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGCGAAUGUGAUUGUUUAUCUUUGACUGUGGAUGAUUGUGAUUCUGGUUCAUGUGUACUUGUUACCAUGACUAGAUCCACACUCAUCCAUAGAAACUGAUAUUUCUUCGAUGCACGCGC
Get precursor sequence
Structure
        10          20        30        40        50         
GGCGAAUGUGAUUGUUU--|  UUUGA          U    AU      U    UGUAC 
                   AUC     CUGUGGAUGA UGUG  UCUGGU CAUG     U
                   UAG     GAUACCUACU ACAC  AGAUCA GUAC     U
CGCGCACGUAGCUUCUUUA^  UCAAA          C    CU      -    CAUUG 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-279-P11_5p*
mirBase accessionNone
Sequence 
0- GAUGAUUGUGAUUCUGGUUCAUG -23
Get sequence
Mature sequence

Lpo-Mir-279-P11_3p
mirBase accessionNone
Sequence 
37- UGACUAGAUCCACACUCAUCCA -59
Get sequence