MirGeneDB ID | Loc-Mir-221-P1b |
Family name |
MIR-221 (all species) |
Seed |
CUCAGUA |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-221-P1a
Loc-Mir-221-P2a
|
Orthologues |
Aca-Mir-221-P1b
Ami-Mir-221-P1b
Cli-Mir-221-P1b
Cmi-Mir-221-P1b
Cpi-Mir-221-P1b
Dre-Mir-221-P1b
Gga-Mir-221-P1b
Gja-Mir-221-P1b
Lch-Mir-221-P1b
Mun-Mir-221-P1b
Oan-Mir-221-P1b
Pbv-Mir-221-P1b
Spt-Mir-221-P1b
Sto-Mir-221-P1b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG7: 22704992-22705054 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUCCAGAUGAUCUGUGAUGUCCAUUGCUAGCUCAGUAUUCAGUGUAGAGUCUGUGUGAUAUUCAUACACAGCUACAUCUGAUUACUGGGUCAAUAAUGACAUCAUAAGCAACCUCUAAAGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAUCCAGAUGAUCUGUG---| C CUA U - AGUCUGUGUGA
AUGUC AUUG GCUCAGUA UCAG UGUAG U
UACAG UAAU UGGGUCAU AGUC ACAUC A
CAGAAAUCUCCAACGAAUAC^ - AAC U U GACACAUACUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Loc-Mir-221-P1b_5p |
mirBase accession | None |
Sequence |
0- GCUCAGUAUUCAGUGUAGAGUCU -23
Get sequence
|
Co-mature sequence |
Loc-Mir-221-P1b_3p |
mirBase accession | None |
Sequence |
40- AGCUACAUCUGAUUACUGGGUCA -63
Get sequence
|