MirGeneDB ID | Loc-Mir-194-P2 |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-194-P2
Ami-Mir-194-P2
Bta-Mir-194-P2
Cfa-Mir-194-P2
Cpi-Mir-194-P2
Cpo-Mir-194-P2
Dno-Mir-194-P2
Dre-Mir-194-P2a
Dre-Mir-194-P2b
Ete-Mir-194-P2
Gja-Mir-194-P2
Gmo-Mir-194-P2a
Gmo-Mir-194-P2b
Hsa-Mir-194-P2
Lch-Mir-194-P2
Mal-Mir-194-P2a
Mal-Mir-194-P2b
Mml-Mir-194-P2
Mmu-Mir-194-P2
Mun-Mir-194-P2
Oan-Mir-194-P2
Ocu-Mir-194-P2
Pbv-Mir-194-P2
Rno-Mir-194-P2
Sha-Mir-194-P2
Spt-Mir-194-P2
Sto-Mir-194-P2
Tni-Mir-194-P2a
Tni-Mir-194-P2b
Xla-Mir-194-P2c
Xla-Mir-194-P2d
Xtr-Mir-194-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG28: 158250-158305 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGCAGCCCUGCUCGACUGGCACUCGCUGGCUGUAACAGCAACUCCAUGUGGAAGAGCUGUGGUUCCAGUGGAGCUGCUGUUACCUGCAGAGAGGAGCCCCUGUGCAGCAGACCGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CGCAGCCCUGCUCGACU- A-| G G U- A G GAGC
GGC CUC CUG C GUAACAGCA CUCCAU UGGAA \
CCG GAG GAC G CAUUGUCGU GAGGUG ACCUU U
ACGCCAGACGACGUGUCC AG^ A - UC C - GGUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-194-P2_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
Star sequence |
Loc-Mir-194-P2_3p* |
mirBase accession | None |
Sequence |
34- CCAGUGGAGCUGCUGUUACCUG -56
Get sequence
|