MirGeneDB 2.1

MirGeneDB ID

Lgi-Novel-3-P2

Family name LGI-NOVEL-3 (all species)
Seed CCACUCA
Species Owl limpet (Lottia gigantea)
MiRBase ID
Paralogues Lgi-Novel-3-P1 
Orthologues
Node of Origin (locus) L. gigantea
Node of Origin (family) L. gigantea
Genome context
(Lotgi1)
LOTGIsca_95: 480768-480826 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUAACUGGGCUAAUAUUAGAGACCGGAAGUUGGAAGUUCACAUGGAUGUAGCCAUAUAGAACAGCUCCACUCAUGUGCACUUCCAGCUUUCUGGCUCGAAAAUCAACAAAGUGAGGAG
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Structure
        10          20         30        40        50         
CGUAACUGGGCUAAUAUUA--|  A      -         U      GA  U   CAUAU 
                     GAG CCGGAA GUUGGAAGU CACAUG  UG AGC     \
                     CUC GGUCUU CGACCUUCA GUGUAC  AC UCG     A
GAGGAGUGAAACAACUAAAAG^  -      U         C      UC  C   ACAAG 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Lgi-Novel-3-P2_5p*

mirBase accessionNone
Sequence
0- UUGGAAGUUCACAUGGAUGUAGC -23
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Mature sequence

Lgi-Novel-3-P2_3p

mirBase accessionNone
Sequence
36- UCCACUCAUGUGCACUUCCAGCU -59
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