MirGeneDB

MirGeneDB ID

Lgi-Mir-96-P1a

Family name MIR-96 (all species)
Seed UUGGCAC
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-96a
Paralogues Lgi-Mir-96-P1b  Lgi-Mir-96-P2  Lgi-Mir-96-P3 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cgi-Mir-96-P1a  Cin-Mir-96-P1  Cli-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Dre-Mir-96-P1  Efe-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Bilateria
Genome context
(Lotgi1)
LOTGIsca_31: 795528-795586 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUCUUUGAUGCAAACUCUCUUGCUCCUACUUGGCACUGGCGGAAUAAUCACGUGAUAAAAUCAGUGAUUGUUACCUGGUGUCAAAAAGGAUUUUGAGAAAAAUCAACAGGCUCUUGC
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Structure
        10          20        30        40        50         
CUUUCUUUGAUGCAAAC--|   UUGC    AC       UG CGG        CGUGAU 
                   UCUC    UCCU  UUGGCAC  G   AAUAAUCA      A
                   AGAG    AGGA  AACUGUG  C   UUGUUAGU      A
CGUUCUCGGACAACUAAAA^   UUUU    AA       GU CA-        GACUAA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Lgi-Mir-96-P1a_5p

MirBase accessionMIMAT0009575
Sequence
0- CUUGGCACUGGCGGAAUAAUCA -22
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Star sequence

Lgi-Mir-96-P1a_3p* (predicted)

MirBase accessionNone
Sequence
38- AUUGUUACCUGGUGUCAAAAA -59
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