MirGeneDB

MirGeneDB ID

Lan-Mir-2001-P1

Family name MIR-2001 (all species)
Seed UGUGACC
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-2001-P2 
Orthologues Bge-Mir-2001-P1  Cbr-Mir-2001  Cel-Mir-2001  Cgi-Mir-2001  Cte-Mir-2001  Dan-Mir-2001  Dme-Mir-2001  Dmo-Mir-2001  Hme-Mir-2001  Isc-Mir-2001  Lgi-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Sko-Mir-2001  Spu-Mir-2001 
Node of Origin (locus) L. anatina
Node of Origin (family) Bilateria
Genome context
(LinAna_1.0)
LFEI01000174: 377902-377960 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACAACAAAAACAGUACCCAUGAUCUGGUCGUUGUGACCGUUAUAAUGGGCAUGGACAUAUGAACAAUGCUCUUUAUAACGCUCAUAACCGACAGACAUGUCUGACACAUCAACCUCAGA
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Structure
        10           20        30         40        50         
ACAACAAAAACAGUACC---|   A    G   -      C        U     UGGACAU 
                    CAUG UCUG UCG UUGUGA CGUUAUAA GGGCA       \
                    GUAC AGAC AGC AAUACU GCAAUAUU CUCGU       A
AGACUCCAACUACACAGUCU^   -    -   C      C        U     AACAAGU 
       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Lan-Mir-2001-P1_5p

MirBase accessionNone
Sequence
0- UUGUGACCGUUAUAAUGGGCA -21
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Star sequence

Lan-Mir-2001-P1_3p* (predicted)

MirBase accessionNone
Sequence
38- CUCUUUAUAACGCUCAUAACC -59
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