MirGeneDB 2.1

MirGeneDB ID

Lan-Mir-1994-P4a

Family name MIR-1994 (all species)
Seed GAGACAG
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-1994-P3a  Lan-Mir-1994-P3b  Lan-Mir-1994-P4b 
Orthologues Cte-Mir-1994  Efe-Mir-1994 
Node of Origin (locus) L. anatina
Node of Origin (family) Lophotrochozoa
Genome context
(LinAna_1.0)
LFEI01001236: 5797-5854 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGACAAAAUUAAAAGAGUUUGUACCGACGAGGGAGUACACACUUGCCUCAUGUUGUGUAAGAGGGUGAGACAGUGUGUCCUCCUUCAGCGUGACAACAGCGCCAUCUGGUAGAAUAA
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Structure
        10           20        30        40        50         
CUGACAAAAUUAAAAGA---|  U  AC  AC       U       U C     GUUGUG 
                    GUU GU  CG  GAGGGAG ACACACU G CUCAU      \
                    CAA CA  GC  CUUCCUC UGUGUGA C GAGUG      U
AAUAAGAUGGUCUACCGCGA^  -  GU  GA       C       - A     GGAGAA 
      110       100         90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Lan-Mir-1994-P4a_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGGAGUACACACUUGCCUCAUG -23
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Mature sequence

Lan-Mir-1994-P4a_3p

mirBase accessionNone
Sequence
36- UGAGACAGUGUGUCCUCCUUCA -58
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