Mir-506-P9

MirGeneDB ID

Hsa-Mir-506-P9

Family name

MIR-506 (all species)

Seed

ACUCAAA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-888

Paralogues

Hsa-Mir-506-P1 Hsa-Mir-506-P2 Hsa-Mir-506-P3 Hsa-Mir-506-P4a1 Hsa-Mir-506-P4a2 Hsa-Mir-506-P4b Hsa-Mir-506-P5 Hsa-Mir-506-P6a1 Hsa-Mir-506-P6a2 Hsa-Mir-506-P6b Hsa-Mir-506-P6c Hsa-Mir-506-P7a Hsa-Mir-506-P7b Hsa-Mir-506-P7c Hsa-Mir-506-P8 Hsa-Mir-506-P10 Hsa-Mir-506-P11 Hsa-Mir-506-P12 Hsa-Mir-506-P13 Hsa-Mir-506-P29

Orthologues

Mml-Mir-506-P9

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Eutheria

Genome context
(hg38)

chrX: 145994794-145994850 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P9)

Mir-506-P13 chrX: 145992760-145992816 [-] UCSC Ensembl
Mir-506-P10 chrX: 145994285-145994341 [-] UCSC Ensembl
Mir-506-P9 chrX: 145994794-145994850 [-] UCSC Ensembl
Mir-506-P11 chrX: 145996678-145996734 [-] UCSC Ensembl
Mir-506-P12 chrX: 145997208-145997264 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACAAUUAGCCAUGUUGUGGGCAGUGCUCUACUCAAAAAGCUGUCAGUCACUUAGAUUACAUGUGACUGACACCUCUUUGGGUGAAGGAAGGCUCACCAAGUACACUUUUGUGGUG

Get precursor sequence

Structure

        10          20        30        40        50        
CCACAAUUAGCCAUGUU--|     AGUG  C        A  C          UUAGA 
                   GUGGGC    CU UACUCAAA AG UGUCAGUCAC     \
                   CACUCG    GA GUGGGUUU UC ACAGUCAGUG     U
GUGGUGUUUUCACAUGAAC^     GAAG  A        C  C          UACAU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-506-P9_5p

mirBase accession

MIMAT0004916

Sequence

0- UACUCAAAAAGCUGUCAGUCAC -22

Get sequence

Proposed targets

microrna.org: MIMAT0004916
TargetScanVert: hsa-miR-888-5p
TargetMiner: hsa-miR-888-5p
miRDB: MIMAT0004916

Star sequence

Hsa-Mir-506-P9_3p*

mirBase accession

MIMAT0004917

Sequence

35- GACUGACACCUCUUUGGGUGAA -57

Get sequence

Proposed targets

microrna.org: MIMAT0004917
TargetScanVert: hsa-miR-888-3p
TargetMiner: hsa-miR-888-3p
miRDB: MIMAT0004917