MirGeneDB 2.1

MirGeneDB ID

Hme-Mir-9-o3

Family name MIR-9 (all species)
Seed UAAAGCU
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-79
Paralogues Hme-Mir-9-o1  Hme-Mir-9-o2  Hme-Mir-9-o4 
Orthologues Ami-Mir-9-P3  Bfl-Mir-9  Bla-Mir-9  Bpl-Mir-9  Bta-Mir-9-P3  Cfa-Mir-9-P3  Cin-Mir-9  Cli-Mir-9-P3  Cpi-Mir-9-P3  Cpo-Mir-9-P3  Cte-Mir-9  Dno-Mir-9-P3  Dre-Mir-9-P3a  Esc-Mir-9  Ete-Mir-9-P3  Gga-Mir-9-P3  Gja-Mir-9-P3  Gmo-Mir-9-P3a  Gmo-Mir-9-P3b  Hsa-Mir-9-P3  Isc-Mir-9  Lan-Mir-9  Lch-Mir-9-P3  Lgi-Mir-9  Loc-Mir-9-P3  Mal-Mir-9-P3a  Mal-Mir-9-P3b  Mdo-Mir-9-P3  Mml-Mir-9-P3  Mmu-Mir-9-P3  Mun-Mir-9-P3  Npo-Mir-9  Oan-Mir-9-P3-v1  Oan-Mir-9-P3-v2  Obi-Mir-9  Ocu-Mir-9-P3  Ovu-Mir-9  Pbv-Mir-9-P3  Pma-Mir-9-o3  Pmi-Mir-9  Rno-Mir-9-P3  Sha-Mir-9-P3  Spt-Mir-9-P3  Spu-Mir-9  Tgu-Mir-9-P3  Tni-Mir-9-P3a  Tni-Mir-9-P3b  Xbo-Mir-9  Xla-Mir-9-P3c  Xla-Mir-9-P3d  Xtr-Mir-9-P3 
Node of Origin (locus) H. melpomene
Node of Origin (family) Bilateria
Genome context
(Hmel_1)
HE669612: 9693-9752 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-o3)
Mir-9-o3 HE669612: 9693-9752 [-] Ensembl
Mir-306 HE669612: 9837-9892 [-] Ensembl
Mir-9-o1 HE669612: 10319-10377 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUGACUCGACGCGACGCACGAUGCGACGCUUUGGCGAUUUAGCUCCAUGACGUUGCGUGUAUGCUCAUAAAGCUAGAUUACCAAAGCAUCGCGUCGAUGCAAAUAUCAUCAGAAGACA
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Structure
        10         20         30        40        50         
ACGUGACUCGACGCGAC-   -|       C       CG        CC    CGUUGC 
                  GCA CGAUGCGA GCUUUGG  AUUUAGCU  AUGA      G
                  CGU GCUGCGCU CGAAACC  UAGAUCGA  UACU      U
ACAGAAGACUACUAUAAA   A^       A       AU        AA    CGUAUG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-9-o3_5p*

mirBase accessionNone
Sequence
0- CUUUGGCGAUUUAGCUCCAUGA -22
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Mature sequence

Hme-Mir-9-o3_3p

mirBase accessionMIMAT0024987
Sequence
38- AUAAAGCUAGAUUACCAAAGCA -60
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