| MirGeneDB ID | Gmo-Mir-194-P2a |
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| Family name |
MIR-194 (all species) |
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| Seed |
GUAACAG |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-194b
|
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| Paralogues |
Gmo-Mir-194-P2b
|
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| Orthologues |
Aca-Mir-194-P2
Ami-Mir-194-P2
Bta-Mir-194-P2
Cfa-Mir-194-P2
Cpi-Mir-194-P2
Cpo-Mir-194-P2
Dno-Mir-194-P2
Dre-Mir-194-P2a
Ete-Mir-194-P2
Gja-Mir-194-P2
Hsa-Mir-194-P2
Lch-Mir-194-P2
Loc-Mir-194-P2
Mal-Mir-194-P2a
Mml-Mir-194-P2
Mmu-Mir-194-P2
Mun-Mir-194-P2
Oan-Mir-194-P2
Ocu-Mir-194-P2
Pbv-Mir-194-P2
Rno-Mir-194-P2
Sha-Mir-194-P2
Spt-Mir-194-P2
Sto-Mir-194-P2
Tni-Mir-194-P2a
Xtr-Mir-194-P2
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3610: 119729-119786 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGCUGCAGCUGGAGUGUGGGUCUCACCAGCUGUAACAGCAUCUCCAUAUGGAUGAGUGUCUGGUGUCCAGUGGAGCUGCUGUUAUCUGUGGAGGGACGCCCGCGGUCAUCCACAGCCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGCUGCAGCUGGAGUGU- -| A GCU U A GAGUG
GG GUCUC CCA GUAACAGCA CUCCAU UGGAU \
CC CAGGG GGU UAUUGUCGU GAGGUG ACCUG U
GCCGACACCUACUGGCGC G^ A GUC C - UGGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-194-P2a_5p |
| mirBase accession | MIMAT0044233 |
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| Sequence |
0- UGUAACAGCAUCUCCAUAUGGAU -23
Get sequence
|
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| Star sequence |
Gmo-Mir-194-P2a_3p* |
| mirBase accession | None |
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| Sequence |
36- CCAGUGGAGCUGCUGUUAUCUG -58
Get sequence
|
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