MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-140-P1-v2

Family name MIR-140 (all species)
Seed ACCACAG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-140
Paralogues Gmo-Mir-140-P1-v1 
Orthologues Aca-Mir-140-P1-v1  Aca-Mir-140-P1-v2  Ami-Mir-140-P1-v1  Ami-Mir-140-P1-v2  Bta-Mir-140-P1-v1  Bta-Mir-140-P1-v2  Cfa-Mir-140-P1-v1  Cfa-Mir-140-P1-v2  Cli-Mir-140-P1-v1  Cli-Mir-140-P1-v2  Cmi-Mir-140-P1-v1  Cmi-Mir-140-P1-v2  Cpi-Mir-140-P1-v1  Cpi-Mir-140-P1-v2  Cpo-Mir-140-P1-v1  Cpo-Mir-140-P1-v2  Dno-Mir-140-P1-v1  Dno-Mir-140-P1-v2  Dre-Mir-140-P1-v1  Dre-Mir-140-P1-v2  Ete-Mir-140-P1-v1  Ete-Mir-140-P1-v2  Gga-Mir-140-P1-v1  Gga-Mir-140-P1-v2  Gja-Mir-140-P1-v1  Gja-Mir-140-P1-v2  Hsa-Mir-140-P1-v1  Hsa-Mir-140-P1-v2  Lch-Mir-140-P1  Loc-Mir-140-P1-v1  Loc-Mir-140-P1-v2  Mal-Mir-140-P1-v1  Mal-Mir-140-P1-v2  Mdo-Mir-140-P1-v1  Mdo-Mir-140-P1-v2  Mml-Mir-140-P1-v1  Mml-Mir-140-P1-v2  Mmu-Mir-140-P1-v1  Mmu-Mir-140-P1-v2  Mun-Mir-140-P1-v1  Mun-Mir-140-P1-v2  Oan-Mir-140-P1-v1  Oan-Mir-140-P1-v2  Ocu-Mir-140-P1-v1  Ocu-Mir-140-P1-v2  Pma-Mir-140-o1  Rno-Mir-140-P1-v1  Rno-Mir-140-P1-v2  Sha-Mir-140-P1-v1  Sha-Mir-140-P1-v2  Spt-Mir-140-P1  Sto-Mir-140-P1-v1  Sto-Mir-140-P1-v2  Tgu-Mir-140-P1-v1  Tgu-Mir-140-P1-v2  Tni-Mir-140-P1-v1  Tni-Mir-140-P1-v2  Xla-Mir-140-P1a-v1  Xla-Mir-140-P1a-v2  Xla-Mir-140-P1b-v1  Xla-Mir-140-P1b-v2  Xtr-Mir-140-P1-v1  Xtr-Mir-140-P1-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_497: 168347-168408 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-140-P1-v2)
Mir-140-P1-v1 GeneScaffold_497: 168347-168408 [-] UCSC Ensembl
Mir-140-P1-v2 GeneScaffold_497: 168347-168408 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAUUGUGUGUCUGUCUCCGGCGUCGCGUCAGUGGUUUUACCCUAUGGUAGGUGACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUGUCGAGGGGUGUCUCCGUCCGUUCC
Get precursor sequence
Structure
        10          20        30        40        50        60
UGCAUUGUGUGUCUGUCUC--|      GC   A             A       UGACGU 
                     CGGCGUC  GUC GUGGUUUUACCCU UGGUAGG      C
                     GCUGUAG  CAG CACCAAGAUGGGA ACCAUCU      A
CCUUGCCUGCCUCUGUGGGGA^      GA   G             C       UGUCGU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-140-P1-v2_5p*

mirBase accessionMIMAT0044299
Sequence
0- CAGUGGUUUUACCCUAUGGUAGG -23
Get sequence
Mature sequence

Gmo-Mir-140-P1-v2_3p

mirBase accessionMIMAT0044300
Sequence
39- UACCACAGGGUAGAACCACGGAC -62
Get sequence