MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-194-P1

Family name MIR-194 (all species)
Seed GUAACAG
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-194-P2 
Orthologues Aca-Mir-194-P1  Ami-Mir-194-P1  Bta-Mir-194-P1  Cfa-Mir-194-P1  Cli-Mir-194-P1  Cmi-Mir-194-P1  Cpi-Mir-194-P1  Ebu-Mir-194-o1  Ete-Mir-194-P1  Gga-Mir-194-P1  Hsa-Mir-194-P1  Lch-Mir-194-P1  Mml-Mir-194-P1  Mmu-Mir-194-P1  Mun-Mir-194-P1  Oan-Mir-194-P1  Ocu-Mir-194-P1  Pbv-Mir-194-P1  Pma-Mir-194-o1  Rno-Mir-194-P1  Spt-Mir-194-P1  Sto-Mir-194-P1  Tgu-Mir-194-P1  Xla-Mir-194-P1a  Xla-Mir-194-P1b  Xtr-Mir-194-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015252270.1: 164-219 [-]
Precursor
(pre-Mir +30nt flank)
AACAGAUGCUGUUCAAACAGUGCUGUCAAGUGUAACAGCAACUCCAUGUGGACAAGGCAAAUUUCCAGUGGAGGUGCUGUUACUUUUGAAGGCCACUGACCAGACUGGAAUAGAUA
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Structure
        10         20         30        40        50        
AACAGAUGCUGUUCAAA-    -|  G     U         A      G    CAAGG 
                  CAGU GCU UCAAG GUAACAGCA CUCCAU UGGA     \
                  GUCA CGG AGUUU CAUUGUCGU GAGGUG ACCU     C
AUAGAUAAGGUCAGACCA    C^  A     U         G      -    UUAAA 
    110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Gja-Mir-194-P1_5p

mirBase accessionNone
Sequence
0- UGUAACAGCAACUCCAUGUGGAC -23
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Star sequence

Gja-Mir-194-P1_3p*

mirBase accessionNone
Sequence
34- CCAGUGGAGGUGCUGUUACUUU -56
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