Mir-192-P1

MirGeneDB ID

Gga-Mir-192-P1

Family name

MIR-192 (all species)

Seed

UGACCUA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-215

Paralogues

Orthologues

Aca-Mir-192-P1 Ami-Mir-192-P1 Bta-Mir-192-P1 Cfa-Mir-192-P1 Cli-Mir-192-P1 Cmi-Mir-192-P1 Cpi-Mir-192-P1 Cpo-Mir-192-P1 Dno-Mir-192-P1 Ebu-Mir-192-o1 Ete-Mir-192-P1 Gja-Mir-192-P1 Hsa-Mir-192-P1 Lch-Mir-192-P1 Mdo-Mir-192-P1 Mml-Mir-192-P1 Mmu-Mir-192-P1 Mun-Mir-192-P1 Oan-Mir-192-P1 Oan-Mir-192-P1-as Ocu-Mir-192-P1 Pbv-Mir-192-P1 Pma-Mir-192-o1 Rno-Mir-192-P1 Spt-Mir-192-P1 Sto-Mir-192-P1 Tgu-Mir-192-P1 Xla-Mir-192-P1a Xla-Mir-192-P1b Xtr-Mir-192-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

3: 18902920-18902978 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-192-P1)

Mir-194-P1 3: 18902602-18902657 [+] UCSC Ensembl
Mir-192-P1 3: 18902920-18902978 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUACUUCAGUAAGAACUGGUGUCCAGGAAAAUGACCUAUGAAUUGACAGACUGCUUUCAAAAUGUGCCUGUCAUUUCUAUAGGCCAAUAUUCUGUGCACUUUUCCUACUUUGGCUGCCA

Get precursor sequence

Structure

        10          20        30         40        50        
UUACUUCAGUAAGAACU--    UC     AAA  A     -|  U      ACUGCUUU 
                   GGUG  CAGGA   UG CCUAU GAA UGACAG        C
                   UCAC  GUCUU   AC GGAUA CUU ACUGUC        A
ACCGUCGGUUUCAUCCUUU    GU     AUA  C     U^  U      CGUGUAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-192-P1_5p

mirBase accession

MIMAT0001134

Sequence

0- AUGACCUAUGAAUUGACAGACU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-215-5p
miRDB: MIMAT0001134

Star sequence

Gga-Mir-192-P1_3p*

mirBase accession

MIMAT0026514

Sequence

36- CCUGUCAUUUCUAUAGGCCAAUA -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-215-3p
miRDB: MIMAT0026514