MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-9-P2-v2

Family name CEP-NOVEL-9 (all species)
Seed GGAUCUU
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Novel-9-P1-v1  Esc-Novel-9-P1-v2  Esc-Novel-9-P2-v1 
Orthologues Npo-Novel-9 
Node of Origin (locus) E. scolopes
Node of Origin (family) Cephalopoda
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-9-P2-v1_pre_SRIE01024685.1:260448-260585: 38-101 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCAGCCGGAACCGCAGUCAGUUGUGUGCAGUUAGUGGUAAAGCCCUUGCAUUCGACCAGUCUAUCUAUGCAGGAUCUUUAGUCACUAGCUGCUCACCUUUGACACCACAGCAGACACACGCG
Get precursor sequence
Structure
        10          20        30         40        50        60 
CCGCAGCCGGAACCGCA--     UU   U           -|    CC     AUUCGACCA 
                   GUCAG  GUG GCAGUUAGUGG UAAAG  CUUGC         \
                   CAGUU  CAC CGUCGAUCACU AUUUC  GGACG         G
GCGCACACAGACGACACCA     UC   U           G^    UA     UAUCUAUCU 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Star sequence

Esc-Novel-9-P2-v2_5p*

mirBase accessionNone
Sequence
0- AGUUAGUGGUAAAGCCCUUGC -21
Get sequence
Mature sequence

Esc-Novel-9-P2-v2_3p

mirBase accessionNone
Sequence
42- AGGAUCUUUAGUCACUAGCUGC -64
Get sequence