MirGeneDB ID | Esc-Novel-9-P2-v2 |
Family name |
CEP-NOVEL-9 (all species) |
Seed |
GGAUCUU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-9-P1-v1
Esc-Novel-9-P1-v2
Esc-Novel-9-P2-v1
|
Orthologues |
Npo-Novel-9
|
Node of Origin (locus) |
E. scolopes
|
Node of Origin (family) |
Cephalopoda
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-9-P2-v1_pre_SRIE01024685.1:260448-260585: 38-101 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGCAGCCGGAACCGCAGUCAGUUGUGUGCAGUUAGUGGUAAAGCCCUUGCAUUCGACCAGUCUAUCUAUGCAGGAUCUUUAGUCACUAGCUGCUCACCUUUGACACCACAGCAGACACACGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGCAGCCGGAACCGCA-- UU U -| CC AUUCGACCA
GUCAG GUG GCAGUUAGUGG UAAAG CUUGC \
CAGUU CAC CGUCGAUCACU AUUUC GGACG G
GCGCACACAGACGACACCA UC U G^ UA UAUCUAUCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-9-P2-v2_5p* |
mirBase accession | None |
Sequence |
0- AGUUAGUGGUAAAGCCCUUGC -21
Get sequence
|
Mature sequence |
Esc-Novel-9-P2-v2_3p |
mirBase accession | None |
Sequence |
42- AGGAUCUUUAGUCACUAGCUGC -64
Get sequence
|