MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-68

Family name ESC-NOVEL-68 (all species)
Seed GCCCUAU
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. scolopes
Node of Origin (family) E. scolopes
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-68_pre_SRIE01037366.1:31132-31272: 41-101 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUAACUAAAUCAAUCUGGAAGUUUCUCGGAGCCCUAUGCCCUAGUCUCUGAUGUUCUCAAAUAUCUCAGUGACUUGAGCAAAGGGACAUCGAGAGAUUUUCGAUCUCACAACAAUCUGAU
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Structure
        10          20        30         40        50         
UGUAACUAAAUCAAUCU--             AG-|   A   CCU    U    UGUUCU 
                   GGAAGUUUCUCGG   CCCU UGC   AGUC CUGA      C
                   CUUUUAGAGAGCU   GGGA ACG   UCAG GACU      A
UAGUCUAACAACACUCUAG             ACA^   A   AGU    U    CUAUAA 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +2 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-68_5p

mirBase accessionNone
Sequence
0- AGCCCUAUGCCCUAGUCUCUGA -22
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Star sequence

Esc-Novel-68_3p*

mirBase accessionNone
Sequence
38- AGUGACUUGAGCAAAGGGACAUC -61
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