MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-63

Family name ESC-NOVEL-63 (all species)
Seed UCCAGAU
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. scolopes
Node of Origin (family) E. scolopes
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-63_pre_SRIE01009849.1:5806261-5806520: 101-160 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUAUAUCGACGUAUUCCAUGCAUCGCCGAUCCAGAUGUCAGGCUGGUCCUAUAAAGAAUACCACUGGAAAGUCUCCCAUCUCGGGUCGAAAUGCGUGGAACAAGCAGCGAUUGAAAAU
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Structure
        10           20        30         40        50         
CGAUAUAUCGACGUAUU---|       CGC      -     UC     GG   UAUAAAG 
                    CCAUGCAU   CGAUCC AGAUG  AGGCU  UCC       A
                    GGUGCGUA   GCUGGG UCUAC  UCUGA  AGG       A
UAAAAGUUAGCGACGAACAA^       AA-      C     CC     A-   UCACCAU 
.       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-63_5p

mirBase accessionNone
Sequence
0- AUCCAGAUGUCAGGCUGGUCCU -22
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Star sequence

Esc-Novel-63_3p*

mirBase accessionNone
Sequence
37- GGAAAGUCUCCCAUCUCGGGUCG -60
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