MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-61

Family name ESC-NOVEL-61 (all species)
Seed CGCGAAC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) E. scolopes
Node of Origin (family) E. scolopes
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-61_pre_SRIE01024843.1:6556384-6556644: 101-161 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCACUCCUCCAAAUUAUUCUGAGGUGUUACGCGAACCGCUGCUAACCUUGUCUAAUUCUAGUCAACAAGGCAAGCUGCUGUUAGUGGAAUACCUUUGAAAAUGUACAUCAUUUCUUACC
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Structure
        10          20        30        40        50          
CAUCACUCCUCCAAAUUA--|  U        A   G   C  U   AA      CUAAUU 
                    UUC GAGGUGUU CGC AAC GC GCU  CCUUGU      \
                    AAG UUCCAUAA GUG UUG CG CGA  GGAACA      C
CCAUUCUUUACUACAUGUAA^  U        G   A   U  U   AC      ACUGAU 
 .       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-61_5p

mirBase accessionNone
Sequence
0- ACGCGAACCGCUGCUAACCUUGU -23
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Star sequence

Esc-Novel-61_3p*

mirBase accessionNone
Sequence
38- AAGGCAAGCUGCUGUUAGUGGAA -61
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