MirGeneDB ID | Esc-Novel-59-v2 |
Family name |
ESC-NOVEL-59 (all species) |
Seed |
GGACACA |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-59-v1
|
Orthologues |
|
Node of Origin (locus) |
E. scolopes
|
Node of Origin (family) |
E. scolopes
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-59-v1_pre_SRIE01019374.1:6661976-6662238: 100-164 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAGGCGAUAUGGCAUUGGUGAUGUACCCAACCGUUCAUAUCUGAGUCCAGUUGGAACACAGGUCUGAAGAACUGGACACACAAAUGAACGGUUGGGUGGAUAUAUCCAAAAUCCUGGCAGCCGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAGGCGAUAUGGCAUU- -| G AUC A UGGAACACA
GGUG AU UACCCAACCGUUCAU UG GUCCAGU \
CUAU UA GUGGGUUGGCAAGUA AC CAGGUCA G
CGCCGACGGUCCUAAAAC A^ G AAC A AGAAGUCUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Esc-Novel-59-v2_5p* |
mirBase accession | None |
Sequence |
0- ACCGUUCAUAUCUGAGUCCAGU -22
Get sequence
|
Mature sequence |
Esc-Novel-59-v2_3p |
mirBase accession | None |
Sequence |
43- UGGACACACAAAUGAACGGUUG -65
Get sequence
|