| MirGeneDB ID | Esc-Novel-57 |
|---|
| Family name |
ESC-NOVEL-57 (all species) |
|---|
| Seed |
GAUUAUA |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
E. scolopes
|
|---|
| Node of Origin (family) |
E. scolopes
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-57_pre_SRIE01007507.1:751695-751958: 101-164 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGAGAUCCAGUCUGUGGUUCCAUCUGGAAAUGAUUAUAGUUAACGGCCCGAGCGAUUGAUUUCUCUGAUUCUUGGGCCCUAAACUACAAUUGUGUCCGGACAGAAAACUCGCAUACACAGCAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGAGAUCCAGUCUGUGG--| CA A UG A AAC CGAUUGAU
UUC UCUGGA A AUU UAGUU GGCCCGAG U
AAG AGGCCU U UAA AUCAA CCGGGUUC U
GUACGACACAUACGCUCAA^ AC G GU C AUC UUAGUCUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on the 3p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-57_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAUUAUAGUUAACGGCCCGAG -22
Get sequence
|
|---|
| Star sequence |
Esc-Novel-57_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- UGGGCCCUAAACUACAAUUGUG -64
Get sequence
|
|---|
