| MirGeneDB ID | Esc-Novel-56 |
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| Family name |
ESC-NOVEL-56 (all species) |
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| Seed |
UUAAUAU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
E. scolopes
|
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| Node of Origin (family) |
E. scolopes
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-72_pre_SRIE01048493.1:1015823-1015967: 45-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUCCAGACAAAAAGGAAUUUAGCUAGUUUUGUUAAUAUUUCACUGUCUGUUGUCAAGGUGAUAUGAAUAGACAUCGAAAUAUUUACAAAAUCUACUAAACAUUACUGCAUGGUAAUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUCCAGACAAAAAGGAA-| C - U AC GUCAAG
UUUAG UAG UUUUGU AAUAUUUC UGUCUGUU G
AAAUC AUC AAAACA UUAUAAAG ACAGAUAA U
CUAAUGGUACGUCAUUAC^ - U U CU GUAUAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Esc-Novel-56_5p |
| mirBase accession | None |
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| Sequence |
0- GUUAAUAUUUCACUGUCUGUU -21
Get sequence
|
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| Co-mature sequence |
Esc-Novel-56_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UAGACAUCGAAAUAUUUACA -57
Get sequence
|
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