| MirGeneDB ID | Esc-Novel-55 |
|---|
| Family name |
COL-NOVEL-55 (all species) |
|---|
| Seed |
AAAAUUC |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-55
Ovu-Novel-55
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-55_pre_SRIE01055741.1:4998876-4999132: 101-157 [+]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
UUCUUUGAAUGAGGAAUUGGUGUGAAAGCCUAAAAUUCAAGUCUGAGGGUUCCUUUUAACUAAAGAACUUUCUGACUUGAAAUUUGAGCCUUCCCAUCCAGUAAGCAACACCCUGGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCUUUGAAUGAGGAAUU-| U A C A U CUUUU
GGUG GAA GC UAAA UUCAAGUC GAGGGUUC A
CUAC CUU CG GUUU AAGUUCAG CUUUCAAG A
GGGUCCCACAACGAAUGAC^ C C A A U AAAUC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-55_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAAAAUUCAAGUCUGAGGGUUCC -23
Get sequence
|
|---|
| Star sequence |
Esc-Novel-55_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AACUUUCUGACUUGAAAUUUGA -57
Get sequence
|
|---|
