MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-48

Family name COL-NOVEL-48 (all species)
Seed GCAAAGG
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-48  Ovu-Novel-48 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-48_pre_SRIE01007229.1:2093903-2094160: 101-158 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUUCGCGUCUCCGGGCUUUACUGCAUCCAGCAAAGGGCUUGACGCUAGCGAUUUACAAUCACGGCUAGUGACAAAACCUUUGUGGGUAGCGGCGAGGCAUAUCACACAAUACGCUG
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Structure
        10          20         30        40        50        
AUCUUCGCGUCUCCGGG--   UA    -|    G      GC   A       GAUUUA 
                   CUU  CUGC AUCCA CAAAGG  UUG CGCUAGC      C
                   GGA  GGCG UGGGU GUUUCC  AAC GUGAUCG      A
GUCGCAUAACACACUAUAC   GC    A^    -      AA   A       GCACUA 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-48_5p

mirBase accessionNone
Sequence
0- AGCAAAGGGCUUGACGCUAGCG -22
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Star sequence

Esc-Novel-48_3p*

mirBase accessionNone
Sequence
36- CUAGUGACAAAACCUUUGUGGG -58
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