MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-44

Family name COL-NOVEL-44 (all species)
Seed UCGGCUC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-44  Ovu-Novel-44 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-44_pre_SRIE01001414.1:548789-549052: 101-164 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGACGCAGUAGAUUAUUUAAAUAUACCAAAGAAUCACCAUGAGCCGGGGUCGUAUUUUAAUCUUGGCGCGAUCGGCUCGAGGCAGUUCUUCGGCAUAUUUGACAUCACUCAACACACCUUAA
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Structure
        10          20        30        40        50        60  
GCAGACGCAGUAGAUUAU--|       A  A      CA  A       GG    UAUUUUA 
                    UUAAAUAU CC AAGAAU  CC UGAGCCG  GUCG       A
                    AGUUUAUA GG UUCUUG  GG GCUCGGC  UAGC       U
AAUUCCACACAACUCACUAC^       C  C      AC  A       --    GCGGUUC 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Star sequence

Esc-Novel-44_5p*

mirBase accessionNone
Sequence
0- AAGAAUCACCAUGAGCCGGGGUCG -24
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Mature sequence

Esc-Novel-44_3p

mirBase accessionNone
Sequence
42- AUCGGCUCGAGGCAGUUCUUCG -64
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