MirGeneDB ID | Esc-Novel-38-v1 |
Family name |
COL-NOVEL-38 (all species) |
Seed |
UCAUCAU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-38-v2
|
Orthologues |
Obi-Novel-38-v1
Ovu-Novel-38-v1
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-38-v1_pre_SRIE01052018.1:5122539-5122799: 101-161 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGGUCGUCAAUAGGAAAGACAGGGCCAGUACAGCCUUGCAGGUGGUCAAAUACGUGUGUGAAAGACGUUUCAUCAUUCACAAGGCUGCACUGUCCUUGUUUACAUCAUCGAUUUACUGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGGUCGUCAAUAGGAA--| C A CA C ACGUGUG
AGACAGGG CAGU CAGCCUUG GGUGGU AAAU \
UUUGUUCC GUCA GUCGGAAC UUACUA UUUG U
GAGUCAUUUAGCUACUACA^ U C AC C CAGAAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-38-v1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACAGCCUUGCAGGUGGUCAAAU -22
Get sequence
|
Mature sequence |
Esc-Novel-38-v1_3p |
mirBase accession | None |
Sequence |
39- UUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|