MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-38-v1

Family name COL-NOVEL-38 (all species)
Seed UCAUCAU
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Novel-38-v2 
Orthologues Obi-Novel-38-v1  Ovu-Novel-38-v1 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-38-v1_pre_SRIE01052018.1:5122539-5122799: 101-161 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGUCGUCAAUAGGAAAGACAGGGCCAGUACAGCCUUGCAGGUGGUCAAAUACGUGUGUGAAAGACGUUUCAUCAUUCACAAGGCUGCACUGUCCUUGUUUACAUCAUCGAUUUACUGAG
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Structure
        10          20        30        40        50          
GUGGUCGUCAAUAGGAA--|       C    A        CA      C    ACGUGUG 
                   AGACAGGG CAGU CAGCCUUG  GGUGGU AAAU       \
                   UUUGUUCC GUCA GUCGGAAC  UUACUA UUUG       U
GAGUCAUUUAGCUACUACA^       U    C        AC      C    CAGAAAG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Star sequence

Esc-Novel-38-v1_5p* (predicted)

mirBase accessionNone
Sequence
0- ACAGCCUUGCAGGUGGUCAAAU -22
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Mature sequence

Esc-Novel-38-v1_3p

mirBase accessionNone
Sequence
39- UUCAUCAUUCACAAGGCUGCAC -61
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