| MirGeneDB ID | Esc-Novel-35-v2 |
|---|
| Family name |
COL-NOVEL-35 (all species) |
|---|
| Seed |
UCCGCGA |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-35-v1
Esc-Novel-35-v3
|
|---|
| Orthologues |
Obi-Novel-35-v2
Ovu-Novel-35-v2
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-35-v1_pre_SRIE01024843.1:1043292-1043548: 102-158 [+]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
GAUUUCUCAUUUUUCCACUGCAGUUGUUGUACGAACAAGUGGCUGUCGGUUGAAUUUUUAAGACAUCCGCGAUCACUUGUUGUAUGAAGGCAAACGCGUGGAGCUUUCAUCUUUAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUUUCUCAUUUUUCCACU- AG ---| G GC U U AAUUU
GC UUGUU GUAC AACAAGUG UG CGG UG \
CG AACGG UAUG UUGUUCAC GC GCC AC U
AAAUUUCUACUUUCGAGGUG CA AAG^ - UA - U AGAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-35-v2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACGAACAAGUGGCUGUCGGUUGA -23
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-35-v2_3p |
| mirBase accession | None |
|---|
| Sequence |
34- AUCCGCGAUCACUUGUUGUAUGA -57
Get sequence
|
|---|
