MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-34

Family name COL-NOVEL-34 (all species)
Seed GACGAGC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-34  Ovu-Novel-34 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-34_pre_SRIE01002184.1:2166022-2166283: 101-162 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCGUGAGAAUAGCCAGCGUCUGUACGUCCGACGAGCAGGCACGAUAGCGUCUGUGUGUUUGAAAAGGCGCGAUAGCGUCUGUACGUCCGACGGGCGGACGUGAUAUCAUCUACGUCAUUC
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Structure
        10          20        30        40        50        60
AUUCGUGAGAAUAGCCA--|      UA    C    A      ACG  A    CUGUGUG 
                   GCGUCUG  CGUC GACG GCAGGC   AU GCGU       U
                   UGCAGGC  GCAG CUGC UGUCUG   UA CGCG       U
CUUACUGCAUCUACUAUAG^      GG    C    A      CGA  G    GAAAAGU 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-34_5p

mirBase accessionNone
Sequence
0- CGACGAGCAGGCACGAUAGCGU -22
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Co-mature sequence

Esc-Novel-34_3p

mirBase accessionNone
Sequence
40- GCGAUAGCGUCUGUACGUCCGA -62
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