MirGeneDB ID | Esc-Novel-31 |
Family name |
COL-NOVEL-31 (all species) |
Seed |
ACGUGUC |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Obi-Novel-31
Ovu-Novel-31
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-31_pre_SRIE01017536.1:696587-696851: 101-165 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUUCCUACUGUAUCAAAAGUAGUCCGGCUUACGUGUCACCUACAGCCAUGCUUGUCAGCUAUUGGAUACAGCAUGGCAUAUGUGACCCGCUUAGUCGAGGCGUACAGUGUUCGACAGCUACUAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUUCCUACUGUAUCAAAA - - UA-| U C CA UGUCAGCU
GUA GUC CGGCU CG GUCAC UA GCCAUGCU \
CAU CGG GCUGA GC CAGUG AU CGGUACGA A
AAUCAUCGACAGCUUGUGA G A UUC^ C U A- CAUAGGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Esc-Novel-31_5p |
mirBase accession | None |
Sequence |
0- UACGUGUCACCUACAGCCAUGCU -23
Get sequence
|
Star sequence |
Esc-Novel-31_3p* (predicted) |
mirBase accession | None |
Sequence |
42- CAUGGCAUAUGUGACCCGCUUAG -65
Get sequence
|