MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-31

Family name COL-NOVEL-31 (all species)
Seed ACGUGUC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-31  Ovu-Novel-31 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-31_pre_SRIE01017536.1:696587-696851: 101-165 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUCCUACUGUAUCAAAAGUAGUCCGGCUUACGUGUCACCUACAGCCAUGCUUGUCAGCUAUUGGAUACAGCAUGGCAUAUGUGACCCGCUUAGUCGAGGCGUACAGUGUUCGACAGCUACUAA
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Structure
        10        20          30         40        50        60  
UCUUCCUACUGUAUCAAAA   -   -     UA-| U     C  CA        UGUCAGCU 
                   GUA GUC CGGCU   CG GUCAC UA  GCCAUGCU        \
                   CAU CGG GCUGA   GC CAGUG AU  CGGUACGA        A
AAUCAUCGACAGCUUGUGA   G   A     UUC^ C     U  A-        CAUAGGUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-31_5p

mirBase accessionNone
Sequence
0- UACGUGUCACCUACAGCCAUGCU -23
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Star sequence

Esc-Novel-31_3p* (predicted)

mirBase accessionNone
Sequence
42- CAUGGCAUAUGUGACCCGCUUAG -65
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