| MirGeneDB ID | Esc-Novel-30 |
|---|
| Family name |
COL-NOVEL-30 (all species) |
|---|
| Seed |
GAACCAA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Obi-Novel-30
Ovu-Novel-30
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-30_pre_SRIE01056809.1:47390-47534: 45-101 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AUUUUGUUUUUCACGUUACGGUGUGGGCCCGGAACCAACGCUGACUUACCUGGUGACAUGGGAAAGGUAAGUCAGUGCUAGUUUCGCGUCAGCAUCGUCGUCAUCAUCUACUACAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUUUGUUUUUCACGUU--| G C CAA GGUGAC
ACGGUGU GGC CGGAAC CGCUGACUUACCU \
UGCUACG CUG GCUUUG GUGACUGAAUGGA A
AAACAUCAUCUACUACUGC^ A C AUC AAGGGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Novel-30_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GGAACCAACGCUGACUUACCU -21
Get sequence
|
|---|
| Star sequence |
Esc-Novel-30_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- GUAAGUCAGUGCUAGUUUCGC -57
Get sequence
|
|---|
