| MirGeneDB ID | Esc-Novel-3-v3 |
|---|
| Family name |
CEP-NOVEL-3 (all species) |
|---|
| Seed |
UCGGCUG |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Esc-Novel-3-v1
Esc-Novel-3-v2
|
|---|
| Orthologues |
Npo-Novel-3
Obi-Novel-3-v3
Ovu-Novel-3-v3
|
|---|
| Node of Origin (locus) |
Cephalopoda
|
|---|
| Node of Origin (family) |
Cephalopoda
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-3-v1_pre_SRIE01057543.1:1523608-1523868: 101-161 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCUGAUUGUGACGAAAGGGAGGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUAGGUUGCACCCCAGAUACUCCUAACUCAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCUGAUUGUGACGAAA- AG U-| A CC C- A GGGAAUU
GGG GC CC GCCAAACA CCG CGGCUGA AA \
CCC CG GG UGGUUUGU GGC GUCGGCU UU C
CUACUCAAUCCUCAUAGA CA UU^ A U- CA G CCACUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Novel-3-v3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAAACACCCCGCCGGCUGAAAA -22
Get sequence
|
|---|
| Mature sequence |
Esc-Novel-3-v3_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|
|---|
