MirGeneDB ID | Esc-Novel-3-v1 |
Family name |
CEP-NOVEL-3 (all species) |
Seed |
UGUCGGC |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-3-v2
Esc-Novel-3-v3
|
Orthologues |
Npo-Novel-3
Obi-Novel-3-v1
Ovu-Novel-3-v1
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-3-v1_pre_SRIE01057543.1:1523608-1523868: 101-161 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCCUGAUUGUGACGAAAGGGAGGCUCCAGCCAAACACCCCGCCGGCUGAAAAGGGAAUUCUCUCACCUUGUCGGCUGACCGGUUGUUUGGUAGGUUGCACCCCAGAUACUCCUAACUCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCCUGAUUGUGACGAAA- AG U-| A CC C- A GAAUU
GGG GC CC GCCAAACA CCG CGGCUGA AAGG \
CCC CG GG UGGUUUGU GGC GUCGGCU UUCC C
CUACUCAAUCCUCAUAGA CA UU^ A U- CA G ACUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-3-v1_5p* |
mirBase accession | None |
Sequence |
0- CAAACACCCCGCCGGCUGAAAAGG -24
Get sequence
|
Mature sequence |
Esc-Novel-3-v1_3p |
mirBase accession | None |
Sequence |
37- UUGUCGGCUGACCGGUUGUUUGGU -61
Get sequence
|