MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-24-v1

Family name COL-NOVEL-24 (all species)
Seed UUAGUGC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Novel-24-v2  Esc-Novel-24-v3 
Orthologues Obi-Novel-24-v1  Ovu-Novel-24-v1 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-24-v1_pre_SRIE01049505.1:4983878-4984017: 40-101 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCAGAAGGAAGCUUGUUUUCGUUCGCUAGCUGGUUAUGUGAACUAAGAUUCAUUUCUUUAUCAAAUAUUUAGUGCACAUAACUGGCUGACGAACAAAGCGCUAUUCGUCCAAUCACCGC
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Structure
        10           20        30        40        50        60
AAGUCAGAAGGAAGCUU---|    C     C    UG        A      AUUCAUUUC 
                    GUUUU GUUCG UAGC  GUUAUGUG ACUAAG         U
                    CGAAA CAAGC GUCG  CAAUACAC UGAUUU         U
CGCCACUAACCUGCUUAUCG^    -     A    GU        G      AUAAACUAU 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ce Li
Star sequence

Esc-Novel-24-v1_5p*

mirBase accessionNone
Sequence
0- AGCUGGUUAUGUGAACUAAGAU -22
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Mature sequence

Esc-Novel-24-v1_3p

mirBase accessionNone
Sequence
40- UUUAGUGCACAUAACUGGCUGA -62
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